Deepender Kumar, Vinod Chhokar, Sonia Sheoran, Rajender Singh, Pradeep Sharma, Sarika Jaiswal, M. A. Iquebal, Akanksha Jaiswar, J. Jaisri, U. B. Angadi, Anil Rai, G. P. Singh, Dinesh Kumar, Ratan Tiwari, Characterization of genetic diversity and population structure in wheat using array based SNP markers, Mol Biol Rep (2019).
Majumdar Sayanti Guha, Rai Anil, Mishra Dwijesh Chandra, (2019). Integrated Framework for Selection of Additive and Nonadditive Genetic Markers for Genomic Selection. Journal of Computational Biology.
Mir Asif Iquebal, Pradeep Sharma, Rahul Singh Jasrotia, Sarika Jaiswal, Amandeep Kaur, Monika Saroha, U. B. Angadi, Sonia Sheoran, Rajender Singh, G. P. Singh, Anil Rai, Ratan Tiwari & Dinesh Kumar. RNAseq analysis reveals drought-responsive molecular pathways with candidate genes and putative molecular markers in root tissue of wheat, Scientific Reports volume 9, Article number: 13917 (2019)
U. B. Angadi, K. K. Chaturvedi, S. Srivastava and Rai Anil. “A Novel Way of Comparing Protein 3D Structure Using Graph Partitioning Approach,” in IEEE/ACM Transactions on Computational Biology and Bioinformatics.
Rasal, Kiran D., Iquebal, Mir Asif, Jaiswal, Sarika, Dixit, Sangita, Vasam, Manohar, Nandi, Samiran, Raza, Mustafa, Sahoo, Lakshman, Angadi, UB, Rai Anil, Kumar, Dinesh, and Sundaray, Jitendra Kumar Sundaray (2019). Liver specific microRNAs identification in farmed carp, Labeo bata (Hamilton, 1822) fed with starch diet using high-throughput sequencing. Marine Biotechnology
Rasal, Kiran D., Iquebal, Mir Asif, Pandey, Amrendra, Behera, Parmeswari, Jaiswal, Sarika, Vasam, Manohar, Dixti, Sangita, Raza, Mustafa, Sahoo, L., Nandi, Samiran, Angadi, UB, Rai Anil Kumar, Dinesh Nagpure, Naresh, Chaudhari, Aparna and Sundaray, Jitendra Kumar (2019) Revealing liver specific microRNAs linked with carbohydrate metabolism of farmed carp, Labeo rohita (Hamilton, 1822). Genomics.
Farooqi Mohammad Samir, Mishra DC, Chaturvedi KK, Rai Anil, Lal SB, Kumar Sanjeev, Bhati Jyotika and Sharma Anu. (2019) A Review on Recent Statistical Models for RNA-Seq. Journal of Applied Bioinformatics & Computational Biology. 8:1 DOI: 10.4172/2329-9533.1000162.
Jasrotia, Rahul Singh, Yadav, Pramod Kumar, Iquebal, Mir Asif, Bhatt, S.B., Arora, Vasu, Angadi, U.B., Tomar Rukam Singh, Jaiswal, Sarika, Rai, Anil, Kumar, Dinesh (2019). VigSatDB: Genome wide microsatellite DNA marker database of three species of Vigna for germplasm characterization and improvement. Database: The Journal of Biological Databases and Curation.
Sheoran, Sonia,Jaiswal Sarika, Kumar, Deepender, Raghav, Nishu, Sharma, Ruchika, Pawar, Sushma, Paul, Surinder, Iquebal, M.A., Jaiswar, Akanksha, Sharma, Pradeep, Singh, Rajender, Singh, CB Gupta, Arun, Kumar, Neeraj,Angadi, U.B., Rai, Anil, Singh, G.P., Kumar, Dinesh, Tiwari, Ratan (2018).
Uncovering genomic regions associated with 36 agro-morphological traits in Indian spring wheat using GWAS. Frontiers in Plant Science.
Budhlakoti Neeraj, Mishra Dwijesh Chandra, Rai Anil, Lal S. B., Chaturvedi Krishna Kumar, Kumar Rajeev Ranjan (2019). A Comparative Study of Single Trait and Multi-Trait Genomic Selection. Journal of Computational Biology. Vol 26, pg 1-13.
Jaiswal, Sarika, Iquebal, M.A., Arora, Vasu, Angadi, U.B., Khokar, R.S., Sharma, Pradeep, Sheoran, Sonia, Singh, G.P., Rai, Anil, Kumar, Tiwari, Ratan, Dinesh (2019). Development of species specific putative miRNA and its target prediction tool in wheat (Triticum aestivum L.). Scientific Reports, DOI : 10.1038/s41598-019-40333-y
Singh, Rajender, Iquebal, MA, Mishra, CN, Jaiswal, Sarika, Kumar, Deepender, Raghav, Nishu, Paul, Surinder, Sheoran, Sonia, Sharma, Pradeep, Gupta, Arun, Tiwari, Vinod, Angadi, UB, Kumar, Neeraj, Rai, Anil, Singh, GP, Kumar, Dinesh and Tiwari, Ratan (2019) Development of model web-server for crop variety identification using throughput SNP genotyping data. Scientific Reports (Nature Group of Journal).
Mukherjee, Sabyasachi, Mukherjee, Anupama, Singh, Rahul Jasrotia, Jaiswal, Sarika, Iquebal, Mir Asif, Longkumer, Imsusosang, Mech, Moonmoon, Vupru, Kezhavituo, Khate, Kobu, Rajkhowa, Chandan, Mitra, Abhijit, Rai, Anil and Kumar, Dinesh (2019). Muscle transcriptome signature and gene regulatory network in two divergent lines of a semi-domesticated bovine Mithun (Bos frontalis). Genomics (Elsevier Journal)
Jerome A, Bhati J, Mishra DC, Chaturvedi KK, Rao AR, Rai A, Sikka P, Singh I (2019). MicroRNA-related markers associated with corpus luteum tropism in buffalo (Bubalus bubalis). Genomics
Sureshkumar V, Dutta Bipratip, Kumar Vishesh, Prakash G, Mishra Dwijesh C, Chaturvedi KK, Rai Anil, Sevanthi Amitha Mithra, Solanke Amolkumar U (2019). RiceMetaSysB: a database of blast and bacterial blight responsive genes in rice and its utilization in identifying key blast-resistant WRKY genes. Database.
Singh Indra , Deb Rajib , Kumar Sanjeev , Singh Rani, Andonissamy Jerome, Smita Shuchi , Singh Gyanendra Sengar, Kumar Rajiv, Ojha Krishna Kumar, Sahoo Nihar Ranjan, S Murali , Chandran Rejani, V Radhakrishnan Nair, Lal SB, Mishra Dwijesh Chandra & Rai Anil (2019). Deciphering Foot-and-Mouth Disease (FMD) virus-host Tropism. Journal of Biomolecular Structure and Dynamics. Deciphering Foot-and-Mouth Disease (FMD) virus-host Tropism. Journal of Biomolecular Structure and Dynamics, DOI: 10.1080/07391102.2019.1567386.
Das, Ritwika, Arora, Vasu, Jaiswal, Sarika, Iquebal, MA, Angadi, UB, Singh, Rakesh, Shil, Sandip, Rai, Anil and Kumar Dinesh (2018). PolyMorphPredict: Web server for rapid polymorphic SSR locus discovery from whole genome and transcriptome data. Frontiers in Plant Sciences.
Jaiswal, Sarika, Jadhav, Pravin V., Jasrotia, Rahul Singh, Kale, Prashant B., Kad, Snehal K., Moharil, Mangesh P., Dudhare, Mahendra S., Deshmukh, Amit G., Mane, Shyamsundar S., Nandanwar, Ravindra S., Penna, Suprasanna, Manjaya, Joy G., Iquebal, Mir Asif, Tomar, Rukam Singh, Rai, Anil, Kumar, Dinesh (2018). Transcriptomic signature reveals mechanism of flower bud distortion in witches’-broom disease of soybean (Glycine max). BMC Plant Biology
Kumar Ranjeet R, Singh Khushboo, Ahuja Sumedha,Tasleem Mohd, Singh Indra, Kumar Sanjeev, Grover Monendra, Mishra Dwijesh, Rai Gyanendra K, Goswami Suneha, Singh Gyanendra P, Chinnusamy Viswanathan, Rai Anil, Praveen Shelly (2018). Quantitative proteomic analysis reveals novel stress-associated active proteins (SAAPs) and pathways involved in modulating tolerance of wheat under terminal heat. Functional & Integrative Genomics, pp 1–20.
Mishra Dwijesh Chandra *, Kumar Sanjeev, Lal SB, Saha Arijit,Chaturvedi KK,Budhlakoti Neeraj and Rai Anil (2018). TAGPT: A Web Server for Prediction of Trait Associated Genes using Gene Expression Data. Annals of Genetics and Genetic Disorders. 1(1): 1003.
अनुशर्मा, ज्योतिकाभाटी, शशिभूषणलाल, कृष्णकुमारचतुर्वेदी, मोहम्मदसमीरफ़ारूकीऔर अनिलराय (2018). संगणनात्मकविधियोंकेद्वाराअरहरमेंमाइक्रो-आर.एन.ए. कीपहचानएवंउसकाविवरण, भारतीयकृषिअनुसंधानपत्रिका, 33(1), 51-57.
Kumar Ranjeet Ranjan; Goswami Suneha; Singh Khushboo; Dubey Kavita; Rai Gyanendra K; Singh Bhupinder; Singh Shivdhar; Grover Monendra; Mishra Dwijesh; Kumar Sanjeev; Bakshi Suman; Rai Anil; Pathak Himanshu; Chinnusamy Viswanathan; Praveen Shelly. (2018) Characterization of Novel Heat-Responsive Transcription Factor (TaHSFA6e) Gene Involved in Regulation of Heat Shock Proteins (HSPs) – a Key Member of Heat Stress-Tolerance Network of Wheat. Journal of Biotechnology. Volume 279, Pages 1-12.
Hukam C. Rawal, S. V. Amitha Mithra, Kirti Arora, Vishesh Kumar, Neha Goel, Dwijesh Chandra Mishra, K. K. Chaturvedi, Anil Rai, S. Vimala Devi, T. R. Sharma and Amolkumar U. Solanke (2018) . Genome-Wide Analysis in Wild and Cultivated Oryza Species Reveals Abundance of NBS Genes in Progenitors of Cultivated Rice. Plant Molecular Biology Reporter. Pages 1-14,
Kumar A, Farooqi MS, Mishra DC, Kumar S, Rai A, Chaturvedi KK, Lal SB, Sharma, A. (2018). Prediction of miRNA and Identification of their Relationship Network Related to Late Blight Disease of Potato. Microrna. 7(1):11-19. doi: 10.2174/2211536607666171213123038. PubMed PMID: 29237394.
Arora, Vasu, Kapoor, Neera, Fatma, Samar, Jaiswal, Sarika, Iquebal, Mir Asif, Rai, Anil and Kumar, Dinesh (2018). BanSatDB: Whole genome based database of putative and experimentally validated microsatellite markers of three Musa spp. Crop Journal.
Das Samarendra, Rai Anil, Mishra D. C. & Rai. Shesh N. (2018). Statistical Approach for Selection of Biologically Informative Genes. Gene.
Das Samarendra, Rai Anil, Mishra D. C. & Rai. Shesh N. (2018). Statistical Approach for Gene Set Analysis with Trait Specific Quantitative Trait Loci. Nature Scientific Reports. 8:2391 | DOI:10.1038/s41598-018-19736-w.
Jaiswal, Sarika, Antala, Tushar J., Kheni, Jashminkumar, Chopra, Meenu, Mandavia, M. K., Tomar, Rukam S., Jasrotia, Rahul Singh, Iquebal, M.A., Angadi, U.B., Rai, Anil, Kumar, Dinesh (2017) Transcriptomic signature of drought response in pearl millet (Pennisetum glaucum (L.) and development of web-genomic resources. Nature Scientific Reports:
Jaiswal, Sarika, Sheoran, Sonia, Arora, Vasu, Angadi, U.B., Iquebal, M.A., Raghav, Nishu, Aneja, Bharti, Kumar Deepender, Khokar, R.S., Sharma, Pradeep, Singh, G.P., Rai, Anil, Tiwari, Ratan, Kumar, Dinesh. (2017). Putative Microsatellite DNA Marker-Based Wheat Genomic Resource for Varietal Improvement and Management. Frontiers in Plant Sciences.
Singh Indra, Smita Shuchi, Mishra Dwijesh C., Kumar Sanjeev, Singh Binay K., Rai Anil. Abiotic Stress Responsive miRNA-Target Network and Related Markers (SSR and SNP) in Brassica juncea. Frontiers in Plant Science.
Tandon, G., Singh, S., Kaur, S., Sarika, Iquebal, M.A., Rai, A., Kumar, D. (2017). In silico identification of the genes related to biotic stresses in Solanum lycopersicum. Genomics Data.14, 82-90.
Iquebal, Mir A, Jaiswal, Sarika, Mahato, Ajay K, Jayaswal, Pawan K, Angadi, U.B., Kumar, Neeraj, Sharma, Nimisha, Singh, Anand, Srivastav, Manish, Praksh, Jai, Singh, Sanjay K, Khan, Kasim, Mishra, Rupesh K, Rajan, Shailendra, Bajpai, Anju, Sandhya, BS, Nischita, Puttaraju, Ravishankar, KV, Dinesh, MR, Rai, Anil, Kumar, Dinesh, Sharma, Tilak R., Singh, Nagendra K. (2017). MiSNPDb: a web based genomic resources of tropical ecology fruit mango (Mangifera indica L.) for phylogeography and varietal differentiation. Nature Scientific Reports 7, Article number: 14968(2017)
Rai, Anil,Choudhary, Pooja, Malhotra, Suruchi, Bharadwaj, C, Gaikwad, Kishor, Kaur, Sukhdeep, Chopra, Meenu, Tandon, Gitanjali, Jaiswal, Sarika, Iquebal, Mir A, Kumar, Dinesh, Srinivasan, Jain, Pradeep K. (2017). Transcriptomic signature of fusarium toxin in chickpea unveiling wilt pathways and marker discovery. Physiological and Molecular Plant Pathology , 100, 163-177.
Anil Rai,Rahul Singh Jasrotia, Mir Asif Iquebal, Pramod Kumar Yadav, Neeraj Kumar, Sarika Jaiswal, U.B. Angadi, Dinesh Kumar (2017). Development of transcriptome based web genomic resources of yellow mosaic disease in Vigna mungo. Physiology and Molecular Biology of Plants
Anil Rai,Iquebal, Mir A., Tomar, Rukam Singh, Parakhia, M.V., Singla, Deepak, Jaiswal, Sarika, Rathod, V.M., Padhiyar, S.M., Kumar, Neeraj, and Kumar, Dinesh. (2017) Draft whole genome sequence of groundnut stem rot fungus Athelia rolfsii revealing genetic architect of its pathogenicity and virulence. Nature Scientific Reports, Scientific Reports 7, Article number: 5299 doi:10.1038/s41598-017-05478-8
Anil Rai,Mishra, DC, Smita, S, Singh I, Devi, MN,Kumar S, Farooqi, MS, Chaturvedi, KK ,(2017).
Prediction of novel putative miRNAs and their targets in buffalo. Indian Journal of Animal Sciences, 87(1), 59–63.
Das, S, Meher, PK, Rai, A, Bhar LM, Mandal BN (2017) Statistical Approaches for Gene Selection, Hub Gene Identification and Module Interaction in Gene Co-Expression Network Analysis: An Application to Aluminum Stress in Soybean (Glycine max L.). PLoS ONE 12(1): e0169605. DOI:10.1371/journal.pone.0169605.
Biswas, A, Rai, A, Ahmad, T and Sahoo, PM (2017). Spatial Estimation and Rescaled Spatial Bootstrap Approach for Finite Population. Communications in Statistics -Theory and Methods, 46(1), 373-388.
Ray, M, Rai, A, Ramasubramanian, V and Singh KN. (2016). ARIMA-WNN hybrid model for forecasting wheat yield time series data Journal of the Indian Society of Agricultural Statistics, 70(1), 63-70.
Sharma, Pradeep, Tiwari, Ratan, Saharan, M.S., Sharma, Indu, Kumar, Jitender, Mishra, Shefali, Muthusamy, Senthilkumar K., Gupta, R.K., Jaiswal, Sarika, Iquebal, Mir Asif, Angadi, U.B., Kumar, Neeraj, Fatma, Samar, Rai, A., Kumar, Dinesh (2016) Draft Genome Sequence of the Karnal Bunt fungus, Tilletia indica Mitra: Two monosporidial lines (PSWKBGH-1 and 2). Genome Announcement 4(5):e00928-16. doi:10.1128/genomeA.00928-16.
Kaur, Sukhdeep, Iquebal, M.A., Jaiswal, Sarika, Tandon, Gitanjali, Sundaram, R.M., Gautam, R.K., Suresh, K.P., Rai, A. and Kumar Dinesh (2016). A meta-analysis of potential candidate genes associated with salinity stress tolerance in rice. Agrigene 1, 126-134.
Shukla, Shantanu Shukla, Iquebal, MA, Jaiswal, Sarika, Angadi, UB, Fatma, Samar, Kumar, Neeraj, Jasrotia, Rahul S, Fatima, Yasmin, Rai, A., Kumar, Dinesh (2016) The Onion Genomic Resource: A Genomics and Bioinformatics driven resource for onion breeding. Plant Gene, 8: 9-15
Suneha Goswami, Ranjeet R. Kumar, Kavita Dubey, Jyoti P. Singh, Sachidanand Tiwari, Ashok Kumar, Shuchi Smita, Dwijesh C. Mishra, Sanjeev Kumar, Monendra Grover, Jasdeep C. Padaria, Yugal K. Kala, Gyanendra P. Singh, Himanshu Pathak, Viswanathan Chinnusamy, Anil Rai, Shelly Praveen and Raj D. Rai. (2016). SSH analysis of endosperm transcripts and characterization of heat stress regulated expressed sequence tags in bread wheat. Frontiers in Plant Science, 7, 1230.
Garima Vats, Monendra Grover, Avantika Singh, Nidhi Chandra, Neetesh Pandey and Rai, A. (2016) Role of palmitoylation and nitration in modification of large number of proteins associated with drought stress in plants. Agrica, 2016, 5: 59-62
Md. Samir Farooqi, Mishra D. C., Niyati Rai, DP Singh, Rai, A., Chaturvedi, K.K., Ratna Prabha and Manjeet Kaur (2016). Genome-wide relative analysis of codon usage bias and codon context pattern in the bacteria Salinibacter ruber, Chromohalobacter salexigens and Rhizobium etli. in Biochemistry and Analytical Biochemistry. 5:257. doi:10.4172/2161-1009.1000257.
M. Grover.,Pandey, N. and Rai, A. (2016) First report on Quantum Computational Logic in Biological Networks, International Journal of Innovative Research in Technology and Science, 4:22-24
Ankur Biswas, Rai, A.Tauqueer Ahmad & Prachi Misra Sahoo (2016): Spatial Estimation and Rescaled Spatial Bootstrap Approach for Finite Population. Communications in Statistics – Theory and Methods, http://dx.doi.org/10.1080/03610926.2014.995820.
Arfa Anjum, Seema Jaggi, Eldo Varghese, Shewtank Lall, Arpan Bhowmik, and Rai, A. (2016) Identification of Differentially Expressed Genes in RNA-seq Data of Arabidopsis thaliana: A Compound Distribution Approach. Journal of Computational Biology, 23(4), DOI: 10.1089/cmb.2015.0205.
Jaiswal, Sarika, Dhanda, S.K., Iquebal, M.A., Arora, Vasu, Shah, Tejas M., Angadi, U.B., Joshi, Chaitanya G., Rahgava, G.P.S., Rai, A., and Kumar, Dinesh (2016). BIS-CATTLE: A Web Server for Breed Identification using Microsatellite DNA Markers. American Journal of Bioinformatics,
Jyotika Bhati, Pavan Chaduvula K, Rai, A., Kishore Gaikwad, Soma Marla S and Sanjeev Kumar (2016). In-Silico Prediction and Functional Analysis of Salt Stress Responsive Genes in Rice (Oryza sativa). J Rice Res., 4:1
Singh, Binay K., Mishra, Dwijesh C., Yadav, Sushma, Ambawat, Supriya, Vaidya, Era, Tribhuvan, Kishor U., Kumar, Arun, Kumar, Sujith, Kumar, Sanjeev, Chaturvedi, K. K., Rani, Reema, Yadav, Prashant, Rai, A., Rai, P. K., Singh, V. V. and Singh, Dhiraj. (2016).Identification, characterization, validation and cross-species amplification of genic-SSRs in Indian Mustard (Brassica juncea). Journal of Plant Biochemistry and Biotechnology. PP.1-11.
Kumar Ranjeet R, Goswami Suneha, Sharma Sushil K, Kala Yugal K, Rai Gyanendra K, Mishra Dwijesh C, Grover Monendra, Singh Gyanendra P, Pathak Himanshu, Rai, A., Chinnusamy Viswanathan , Rai Raj D (2015). Harnessing Next Generation Sequencing in Climate Change: RNA-Seq Analysis of Heat Stress-Responsive Genes in Wheat (Triticum aestivum L.). Omics: a journal of integrative biology, DOI:10.1089/omi.2015.0097.
Nagesh Mandadi, Christopher Hendrickson, Savithri Handanahal, Thippeswamy Rajappa, Nikhita Pai, Saleem Javeed, Abraham Verghese, Rai, A., Aneesh Pappu, Geetha Nagaraj, Amit Dhingra (2015): Genome sequences of Photorhabdus luminescens strains isolated from entomopathogenic nematodes from southern India. Genomics Data. doi: 10.1016/j.gdata.2015.07.023.
Nigam Deepti, Kadimi Puneet K, Sanjeev Kumar, Mishra Dwijesh C and Rai, A. (2015). Computational analysis of miRNA-targets Community Network reveals cross talk among different metabolism. Genomics Data. 5, 292-296.
Pavan K Chaduvula, Jyotika Bhati, Rai, A. Kishore Gaikwad, Soma S Marla, M Elangovan, Sanjeev Kumar (2015): Insilico expressed sequence tag analysis in identification and characterization of salinity stress responcible genes in Sorghum bicolour, Australian Journal of Crop Sciences, 9(9), 799-806.
Tandon, Gitanjali, Sarika, Iquebal, M. A., Kumar, Sunil, Kaur, Sukhdeep, Rai, A. and Kumar, Dinesh. (2015). Evidence of Salicylic Acid pathway with EDS1 and PAD4 proteins by molecular dynamics simulation for Grape improvement. Journal of Biomolecular Structure and Dynamics. 33 (10), 2180–2191.
Das S., Pandey, P., Rai, A. and Mohapatra C. (2015). A computational system biology approach to construct gene regulatory networks for salinity response in rice (Oryza sativa). Indian Journal of Agricultural Sciences 85 (12).
Sahu T.K., Rao A.K., Meher, P.K., Sahoo B.C., Gupta S.,Rai, A. (2015).
Computational Prediction of MHC class I epitopes for most common viral diseases in cattle (Bos Taurus). Indian Journal of Biochemistry and Biophysics, 52, 34-44.
Bijay Kumar Behera, Vishwamitra Singh Baisvar, Kavita Kumari, Ajaya Kumar Rout, Sudip Pakrashi, Prasenjet Paria, A. R. Rao and Rai, A. (2015). The complete mitochondrial genome of the Anabas testudineus (Perciformes, Anabantidae) and its comparison with other related fish species. Mitochondrial DNA, DOI: 10.3109/19401736.2015.1115490.
Iquebal, MA, Sarika, Angadi, UB, Sablok, Gaurav, Arora, Vasu, Kumar, Sunil, Rai, A. and Kumar, Dinesh (2015). SBMDb: First whole genome microsatellite DNA marker database of sugar beet for bioenergy and industrial applications. Database: The Journal of Biological Databases and Curation (Oxford Journal). 2015: bav111.
Ankur Biswas, Rai, A. Tauqueer Ahmad and Prachi Misra Sahoo (2015). Spatial Estimation approach under ranked set sampling from spatial correlated finite population. Int. J. Agricult. Stat. Sci. Vol. 11, No. 2, pp. 551-558, 2015.
Lal, S.B., Sharma, A., Chandra, H. and Rai, A. (2014). Web Based Sample Selection for Survey Data. J. of Ind. Soc. Of Agric. Stat., 68(1): 101-108.
Ratna Prabha, Dhananjaya P. Singh, Shailendra K. Gupta, Rai, A. (2014). Whole Genome Phylogeny of Prochlorococcus Marinus Group of Cyanobacteria: Genome Alignment and Overlapping Gene Approach. Interdiscip Sci Comput Life Sci., 6: 1-9, DOI: 10.1007/s12539-013-0024-9.
Keshri, V, Dhananjaya P, Singh, R, Prabha, A, Rai, A. and Sharma, K (2014). Genome subtraction forthe identification of potential antimicrobial targetsin Xanthomonasoryzaepv. oryzae PXO99Apathogenic to rice. 3, Biotech., 4: 91-95, DOI:10.1007/s13205-013-0131-7.
Anu Sharma, S. B. Lal, D. C. Mishra, Sudhir Srivastava and Rai, A. (2013). A web Based Software for Synonymous Codon Usage Indices. International Journal of Information and Computation Technology, 3(3): 147-152.
Lal, SB, Pandey, Pankaj, K, Rai, Punit K, Rai, A., Sharma, Anu and Chaturvedi, KK (2013). Designand development of portal for biological databasein agriculture. Bioinformation, 9(11): 588-598.
Kumar, A, Mishra, DC, Rai, A., Sharma, MK and Gajula, MNVP (2013). In-silico analysis ofprotein-protein interaction between resistanceand virulance protein during leaf rust disease in wheat (Triticumaestivum L.). World Res. J. Pept. Protein, 2(1): 52-58.
Sarika, Arora, Vasu, Iquebal, M.A., Rai, A., and Kumar, Dinesh (2013). PIPEMicroDB: Microsatellite database and primer generation tool for pigeonpea genome. Database: The Journal of Biological Databases and Curation, Vol. 2013, Article ID bas054, doi:10.1093/database/bas054.
Sarika, Arora, Vasu, Iquebal, M.A., Rai, A. and Kumar, Dinesh (2013). In silico mining of putative microsatellite markers from whole genome sequence of water buffalo (Bubalis bubalis) and development of first BuffSatDB. BMC Genomics, 14: 43.
Bajetha, Garima, Bhati, Jyotika, Sarika, Iquebal, M. A., Rai, A., Arora, Vasu and Kumar, Dinesh (2013). Analysis and functional annotation of expressed sequence tags of Water Buffalo. Animal Biotechnology, 24(1): 25-30.
Shashi Bhushan Lal, Pankaj Kumar Pandey, Punit K Rai, Rai, A., Anu Sharma, Krishna Kumar Chaturvedi (2013). Design and development of portal for biological database in agriculture. Bioinformation, 9(11): 588-598.
Rajkumari Sanjukta, Mohammad Samir Farooqi, Naveen Sharma, Rai, A., Dwijesh Chandra Mishra & Dhananjaya P Singh (2012). Trends in the codon usage patterns of Chromohalobacter salexigens genes. Bioinformation, 8(22): 1087-1095.
Dhananjaya P. Singh,Ratna Prabha, Rai, A. and Dilip K. Arora ( 2012).
Bioinformatics-Assisted Microbiological Research: Tasks, Developments and Upcoming Challenges. American Journal of Bioinformatics, 1(1): 10-19.
Sarika, Iquebal, M. A., Rai, A. (2012). Biotic stress resistance in agriculture through antimicrobial peptides. Peptides, 36, 322-330.
Sarika, Iquebal, M. A. and Rai, A. (2012). In silico analysis and homology model of legume antioxidant proteins. Online Journal of Bioinformatics, 13(1), 120-129.
Ratna Prabha, Dhananjaya P. Singh, Shailendra K. Gupta, Samir Farooqi and Rai, A.. Synonymous codon usage in Thermosynechococcus elongatus (cyanobacteria) identifies the factors shaping codon usage variation. Bioinformation, 8(13), 622-628.
Poonam Chilana, Anu Sharma and Rai, A.(2012). Insect Genomic Resources: Status, Availability and Future. Current Science. Vol. 102, No. 4, 571-580.
Gharde, Yogita. Rai, A., Chandra Hukum (2012). Hierarchical Bayes Small area approach for spatial data, Jr. Ind. Soc. Ag. Stat. 66(2), 259-268.
Kumar Manoj, Ahmad Taqueer, Rai, A., Sahoo, P.M. (2012). Sensitivity analysis of various indicators of composite index, Jr. Ind. Soc. Ag. Stat. , 66(2), 3335-342.
Ahmad, T., Rai, A., and Singh, R. (2012). Objective Spatial Analytic Hierarchy Process for identification of potential agroforestry areas using GIS. Mod. Assist. Statist. Appl., 7(1), 65-73.
Ahmad, T., Rai, A. and Sahoo, P.M. (2012). Comparison of bootstrap techniques for estimation of ratio in complex surveys. Inter. J. Agril. Statist. Sci., 8(1), 355-365.
Kumar, M., Ahmad, T., Rai, A. and Sahoo, P.M. (2012). Sensitivity analysis of various indicators of composite index. J. Ind. Soc. Agril. Statist., 66(2), 335-342.
Sahoo, P.M., Rai, A., Ahmad, T., Singh, R. and Handique, B.K. (2012). Estimation of acreage under paddy crop in Jaintia Hills district of Meghalaya using Remote sensing and GIS. Inter. J. Agril. Statist. Sci., 8(1), 193-202.
Ahmad, T., Bathla, H.V.L., Rai, A., Mathur, D.C. and Sood, R.M. (2011). An alternative sampling methodology for estimation of area and production of horticultural crops. Mod. Assist. Statist. Appl., 6(4), 325-336.
Farooqi, MS, Arora, Alka, Dahiya, Shashi, Rai, A.and Singh, Balbir (2011). PERMISnet-II: Personnel Management Information System Network-II for ICAR. J. Ind. Soc. Agril. Statist. 65(1), 105–113.
Shukla, Rajesh, Rai, A. and Nitasha Monga (2010). India Protection Index: An Objective Measurement of the Economic and Social Well-being of the Indian Population. Margin-The Journal of Applied Economic Research , 4(3), 339–367.
Sree Nilakanta, Kevin Scheibes and Rai, A.(2008). Dimensional issues in agricultural data warehouse design. Computers and Electronics in Agriculture, 60(2), 263-278.
Vishwakarma, R.K., Wanjari, O.D., Rai, A. Bathla, H.V.L. and Gupta R.K. (2007). New Methodology to study harvest and post-harvest losses in Groundnut. Agricultural Situation in India, February, 2007, PP.625-630.
Rai, A., Malhotra, P.K., Sharma, S.D. and Chaturvedi, K.K. (2007). Data Warehousing for Agricultural Research – An Integrated Approach for Decision Making. J. Indian. Soc. Ag. Stat. 61(2), 264-273.
Rai, A. N.K. Gupta and Randhir Singh (2007). Small area estimation of crop production using spatial models. Mod. Asst. Stat. Apl., 2(2), 89-98.
V. Ramasubramanian, Rai, A., and Randhir Singh (2007). Jackknife variance estimation under two-phase sampling. Mod. Asst. Stat. Apl. , 2(1), 27-35.
Rai, A. Vipin Dubey, K. K. Chaturved and Malhotra, P.K. (2007). Issues of design and development of agricultural data warehouse in India. Com. Soc. Ind. 31(1), 43-51.
Ahamad, T., Rai, A., Singh R. and Kant, A. (2007). Model for prediction of area under Yamunanager district of Haryana. Indi. J. Agril. Scien. 77(1), 43-45.
Sharma Naveen, Farooqi Md. Samir, Chaturvedi Krishna Kumar, Lal Shashi Bhushan, Grover Monendra, Rai, A., and Pandey Pankaj (2014). The Halophile Protein Database, Database (Oxford). 2014; doi:10.1093/database/bau114
Iquebal, M.A., Ansari, M. S., Sarika, Dixit,S. P., Verma, N. K., Aggarwal, R. A. K., Jayakumar, S., Rai, A. and Kumar, D. (2014). Locus minimization in breed prediction using artificial neural network approach. Animal Genetics, 45(6), 898–902.
Nigam Deepti, Sanjeev Kumar, Mishra D C, Rai, A. Smita Suchi and Saha Arijit (2014). Synergetic regulatory networks mediated by microRNAs and transcription factors under Salinity, Heat and Drought stress in Oryza Sativa spp. GENE (DOI: 10.1016/j.gene.2014.10.054)
Sarika, Iquebal, MA, Arora, Vasu, Rai, A. and Kumar Dinesh. (2015). Species specific approach for development of web-based antimicrobial peptides prediction tool. Computer and Electronics in Agriculture, 111, 55-61.
Manju Mary Paul, Rai, A. and Sanjeev Kumar (2014). Classification of cereal proteins related to abiotic stress based on their physicochemical properties using support vector machine. Current Science, Vol. 107, No. 8, 1283-89.
Farooqi Md. Samir, Sanjukta R. K., Mishra Dwijesh Chandra, Singh Dhananjaya Pratap, Rai, A., Chaturvedi Krishna Kumar (2014). In silico Analysis of Synonymous Codon Usage Pattern of Rhizobium etli CFN 42, Proc. Natl. Acad. Sci., India, Sect. B Biol.Sci. DOI 10.1007/s40011-014-0457-x.
Farooqi Md. Samir, Sanjukta R. K., Mishra Dwijesh Chandra, Singh Dhananjaya Pratap, Rai, A. Chaturvedi Krishna Kumar (2014). In silico Analysis of Synonymous Codon Usage Pattern of Rhizobium etli CFN 42, Proc. Natl. Acad. Sci., India, Sect. B Biol.Sci. DOI 10.1007/s40011-014-0457-x.
Lal, S.B., Sharma, A., Chandra, H. and Rai, A. (2014). Web Based Sample Selection for Survey Data. J. of Ind. Soc. of Agric. Stat. Vol. 68(1) pp. 101-108.
Kumar A., Mishra D. C., Rai, A. Sharma M.K. and Gajula M.N.V.P. (2013). In Silico Analysis of Protein-Protein Interaction between Resistance and Virulence Protein during Leaf Rust Disease in Wheat (Triticum aestivum L.), World Research Journal of Peptide and Protein ISSN: 2278-4586 & E-ISSN: 2278-4608.
Chilana Poonam, Bhati Jyotika, Sharma Anu, Mishra D. C., Rai, A. (2014). “Analysis of Codon Usage Pattern and Prediction of Potentially Highly Expressed Genes in Drosophila”, European Journal of Molecular Biology and Biochemistry, 1(4), 144-150.
Bhati Jyotika, Chaduvula Kumar Pavan, Rani Ruchi, Sanjeev Kumar and Rai, A. (2014). In-silico prediction and functional analysis of salt stress responsive genes in Maize (Zea mays). European Journal of Molecular Biology and Biochemistry, 1(4):151-157.
Prabha Ratna, Singh Dhananjaya P., Gupta Shailendra K., Rai, A.(2014). Whole Genome Phylogeny of Prochlorococcus Marinus Group of Cyanobacteria: Genome Alignment and Overlapping Gene Approach. Interdiscip. Sci. Comput. Life Sci. 6: 1-9, DOI: 10.1007/s12539-013-0024-9.
Sahu, T.K., Rao, A.R., Dora, S., Gupta, S. and Rai, A. (2014). In silico identification of late blight susceptibility genes in Solanum tuberosum. Ind. J. Genet., 74(2), 229-237.
V. Keshri, Dhananjaya P. Singh, R. Prabha, Rai, A., A. K. Sharma (2014) . Genome subtraction for the identification of potential antimicrobial targets in Xanthomonas oryzae pv. oryzae PXO99A pathogenic to rice, 3 Biotech, 4:91–95, DOI 10.1007/s13205-013-0131-7.
Sandip Kumar Sadhu, Ramasubramanian V., Rai, A. and Adarsh Kumar (2014) Decision Tree Based Models for Classification in Agricultural Ergonomics. Journal of the Society of Statistics, Computers and Applications, Volume 12, Nos. 1&2, 2014 (New Series), pp. 21-33.
Mrinmoy Ray, Ramasubramanian V., Amrender Kumar and Rai, A. (2014). Application of Time Series Intervention Modelling for Modelling and Forecasting Cotton Yield. Journal of the Society of Statistics, Computers and Applications, Volume 12, Nos. 1&2, 2014 (New Series), pp. 61-70.
Tandon Gitanjali, Sarika, Iquebal M A, Kumar Sunil, Kaur Sukhdeep, Rai, A. and Kumar Dinesh. (2015). Evidence of Salicylic Acid pathway with EDS1 and PAD4 proteins by molecular dynamics simulation for Grape improvement. Journal of Biomolecular Structure and Dynamics.
Ankur Biswas, Rai, A., Tauqueer Ahmad and Prachi Misra Sahoo (2014): Spatial Estimation and Rescaled Spatial Bootstrap Approach for Finite Population (Communications in Statistics – Theory and Methods).