Dr Dinesh Kumar

Name

Dr Dinesh Kumar

Completed
  1. Establishment of National Agricultural Bioinformatics Grid in ICAR.
  2. Whole Genome sequencing and development of allied genomic research in two commercially important Fish – Labeo rohita and Clarias batrachus- DBT Funded Project (January 2014 to March 2018)
  3.  Whole genome based SNP mining and development of breed signatures for dairy and dual-purpose indigenous cattle- DBT Funded Project (July 2014 to December 2017)
  4.   Genomic data analysis for identification of economically important markers and viral diagnostics in pulses (Collaboration with ICAR-Indian Institute of Pulses Research, Kanpur) – Funded by ICAR (June 2015 to September 2017)
  5.   Molecular and computational approach to delineate metabolic pathways for better carbohydrate utilization in Labeo spp. (Collaboration with ICAR-Central Institute of Freshwater Aquaculture, Bhubaneshwar)- Funded by ICAR (June 2015 to September 2017)
  6.     Computational approach for harnessing genome information and its integration with wheat phenome for efficient varietal development (Collaboration with ICAR-Indian Institute of Wheat and Barley Research, Karnal)- Funded by ICAR (June 2015 to September 2017)
  7.      Mining and validation of candidate gene markers and screening on antimicrobial peptides of black pepper and small cardamom (Collaboration with ICAR-Indian Institute of Spices Research, Kohzikode, Kerala)- Funded by ICAR (June 2015 to September 2017)
E-mail

dinesh.kumar@icar.gov.in

Designation

Principal Scientist

Awards
  1. DBT Overseasland term Fellowship
  2. CSIR/UGC (NET Fellowship) in Ph.D.
  3. GATE Fellowship
  4. DBT Natioanal Fellowship in PG
Articles
  1.   Deepender Kumar, Vinod Chhokar, Sonia Sheoran, Rajender Singh, Pradeep Sharma, Sarika Jaiswal, M. A. Iquebal, Akanksha Jaiswar, J. Jaisri, U. B. Angadi, Anil Rai, G. P. Singh, Kumar, Dinesh, Ratan Tiwari, Characterization of genetic diversity and population structure in wheat using array based SNP markers, Mol Biol Rep (2019).
  2.      Mir Asif Iquebal, Pradeep Sharma, Rahul Singh Jasrotia, Sarika Jaiswal, Amandeep Kaur, Monika Saroha, U. B. Angadi, Sonia Sheoran, Rajender Singh, G. P. Singh, Anil Rai, Ratan Tiwari &Dinesh Kumar. RNAseq analysis reveals drought-responsive molecular pathways with candidate genes and putative molecular markers in root tissue of wheat, Scientific Reports volume 9, Article number: 13917 (2019)
  3.    Ali, Abid, Kumar, Rakesh, Iquebal, Mir Asif, Jaiswal, Sarika, Kumar, Dinesh and khan, Asad (2018). Role of conserved residues in catalytic activity of NDM-1: an approach of site directed mutagenesis and molecular dynamics. Physical Chemistry Chemical Physics-a Journal of Royal Society of Chemistry.
  4.  Rasal, Kiran D., Iquebal, Mir Asif,Jaiswal, Sarika, Dixit, Sangita, Vasam, Manohar, Nandi, Samiran, Raza, Mustafa, Sahoo, Lakshman, Angadi, UB, Rai Anil, Kumar, Dinesh, and Sundaray, Jitendra Kumar Sundaray (2019). Liver specific microRNAs identification in farmed carp, Labeo bata (Hamilton, 1822) fed with starch diet using high-throughput sequencing. Marine Biotechnology
  5.   Rasal, Kiran D., Iquebal, Mir Asif, Pandey, Amrendra, Behera, Parmeswari, Jaiswal, Sarika, Vasam, Manohar, Dixti, Sangita, Raza, Mustafa, Sahoo, L., Nandi, Samiran, Angadi, UB, Rai Anil, Kumar, Dinesh Nagpure, Naresh, Chaudhari, Aparna and Sundaray, Jitendra Kumar (2019) Revealing liver specific microRNAs linked with carbohydrate metabolism of farmed carp, Labeo rohita (Hamilton, 1822). Genomics.
  6.   Jasrotia, Rahul Singh, Yadav, Pramod Kumar, Iquebal, Mir Asif, Bhatt, S.B., Arora, Vasu, Angadi, U.B., Tomar Rukam Singh, Jaiswal, Sarika, Rai, Anil, Kumar, Dinesh (2019). VigSatDB: Genome wide microsatellite DNA marker database of three species of Vigna for germplasm characterization and improvement. Database: The Journal of Biological Databases and Curation.
  7.     Sheoran, Sonia,Jaiswal Sarika, Kumar, Deepender, Raghav, Nishu, Sharma, Ruchika, Pawar, Sushma, Paul, Surinder, Iquebal, M.A., Jaiswar, Akanksha, Sharma, Pradeep, Singh, Rajender, Singh, CB Gupta, Arun, Kumar, Neeraj,Angadi, U.B.,Rai, Anil, Singh, G.P., Kumar, Dinesh, Tiwari, Ratan (2018). Uncovering genomic regions associated with 36 agro-morphological traits in Indian spring wheat using GWAS. Frontiers in Plant Science.
  8.      Jaiswal, Sarika, Iquebal, M.A., Arora, Vasu, Angadi, U.B., Khokar, R.S., Sharma, Pradeep, Sheoran, Sonia, Singh, G.P., Rai, Anil, Kumar, Tiwari, Ratan, Kumar, Dinesh (2019). Development of species specific putative miRNA and its target prediction tool in wheat (Triticum aestivum L.). Scientific Reports, DOI : 10.1038/s41598-019-40333-y
  9.     Singh, Rajender, Iquebal, MA, Mishra, CN, Jaiswal, Sarika, Kumar, Deepender, Raghav, Nishu, Paul, Surinder, Sheoran, Sonia, Sharma, Pradeep, Gupta, Arun, Tiwari, Vinod, Angadi, UB,Kumar, Neeraj, Rai, Anil, Singh, GP, Kumar, Dinesh and Tiwari, Ratan (2019) Development of model web-server for crop variety identification using throughput SNP genotyping data. Scientific Reports (Nature Group of Journal).
  10.     Das, Ritwika, Arora, Vasu, Jaiswal, Sarika, Iquebal, MA, Angadi, UB, Singh, Rakesh, Shil, Sandip, Rai, Anil and Kumar Dinesh (2018). PolyMorphPredict: Web server for rapid polymorphic SSR locus discovery from whole genome and transcriptome data. Frontiers in Plant Sciences.
  11.      Jaiswal, Sarika, Jadhav, Pravin V., Jasrotia, Rahul Singh, Kale, Prashant B., Kad, Snehal K., Moharil, Mangesh P., Dudhare, Mahendra S., Deshmukh, Amit G., Mane, Shyamsundar S., Nandanwar, Ravindra S., Penna, Suprasanna, Manjaya, Joy G., Iquebal, Mir Asif, Tomar, Rukam Singh, Rai, Anil,Kumar, Dinesh (2018). Transcriptomic signature reveals mechanism of flower bud distortion in witches’-broom disease of soybean (Glycine max). BMC Plant Biology
  12.    Arora, Vasu, Kapoor, Neera, Fatma, Samar, Jaiswal, Sarika, Iquebal, Mir Asif, Rai, Anil and Kumar, Dinesh (2018). BanSatDB: Whole genome based database of putative and experimentally validated microsatellite markers of three Musa spp. Crop Journal.
  13.    Jaiswal, Sarika, Antala, Tushar J., Kheni, Jashminkumar, Chopra, Meenu, Mandavia, M. K., Tomar, Rukam S., Jasrotia, Rahul Singh, Iquebal, M.A., Angadi, U.B., Rai, Anil, Kumar, Dinesh (2017) Transcriptomic signature of drought response in pearl millet (Pennisetum glaucum (L.) and development of web-genomic resources. Nature Scientific Reports
  14. Jaiswal, Sarika, Sheoran, Sonia, Arora, Vasu, Angadi, U.B., Iquebal, M.A., Raghav, Nishu, Aneja, Bharti, Kumar Deepender, Khokar, R.S., Sharma, Pradeep, Singh, G.P., Rai, Anil, Tiwari, Ratan, Kumar, Dinesh. (2017). Putative Microsatellite DNA Marker-Based Wheat Genomic Resource for Varietal Improvement and Management. Frontiers in Plant Sciences.
  15. Tandon, G., Singh, S., Kaur, S., Sarika, Iquebal, M.A., Rai, A., Kumar, D. (2017). In silico identification of the genes related to biotic stresses in Solanum lycopersicum. Genomics Data.14, 82-90.
  16. Choudhary, Pooja, Malhotra, Suruchi, Bharadwaj, C, Gaikwad, Kishor, Kaur, Sukhdeep, Chopra, Meenu, Tandon, Gitanjali, Jaiswal, Sarika,Iquebal, Mir A, Rai, Anil, Kumar, Dinesh, Srinivasan, Jain, Pradeep K. (2017). Transcriptomic signature of fusarium toxin in chickpea unveiling wilt pathways and marker discovery. Physiological and Molecular Plant Pathology , 100, 163-177.
  17. Iquebal, Mir A, Jaiswal, Sarika, Mahato, Ajay K, Jayaswal, Pawan K, Angadi, U.B., Kumar, Neeraj, Sharma, Nimisha, Singh, Anand, Srivastav, Manish, Praksh, Jai, Singh, Sanjay K, Khan, Kasim, Mishra, Rupesh K, Rajan, Shailendra, Bajpai, Anju, Sandhya, BS, Nischita, Puttaraju, Ravishankar, KV, Dinesh, MR, Rai, Anil, Kumar, Dinesh, Sharma, Tilak R., Singh, Nagendra K. (2017). MiSNPDb: a web based genomic resources of tropical ecology fruit mango (Mangifera indica L.) for phylogeography and varietal differentiation. Nature Scientific Reports 7, Article number: 14968(2017)
  18. Dinesh Kumar,Rahul Singh Jasrotia, Mir Asif Iquebal, Pramod Kumar Yadav, Neeraj Kumar, Sarika Jaiswal, U.B. Angadi, Anil Rai (2017). Development of transcriptome based web genomic resources of yellow mosaic disease in Vigna mungo. Physiology and Molecular Biology of Plants
  19. Iquebal, Mir A., Tomar, Rukam Singh, Parakhia, M.V., Singla, Deepak, Jaiswal, Sarika, Rathod, V.M., Padhiyar, S.M., Kumar, Neeraj, Rai, Anil, and Kumar, Dinesh. (2017) Draft whole genome sequence of groundnut stem rot fungus Athelia rolfsii revealing genetic architect of its pathogenicity and virulence. Nature Scientific Reports, Scientific Reports 7, Article number: 5299 doi:10.1038/s41598-017-05478-8
  20. Iquebal, Mir Asif,Soren,Khela Ram, Gangwar, Priyanka, Shanmugavadevel, P S, Aravind K, Singla, Deepak, Jaiswal,Jasrotia, Rahul Singh, Sarika, Chaturvedi, Sushil K, Singh, NP, Varshney, Rajeev K, Rai, Anil, Kumar, Dinesh (2017).Discovery of herbicide resistance genes and its regulatory network in chickpea using transcriptome sequencing. Frontiers in Plant Sciences, 8:958. doi: 10.3389/fpls.2017.00958.
  21. Sharma, Pradeep, Tiwari, Ratan, Saharan, M.S., Sharma, Indu, Kumar, Jitender, Mishra, Shefali, Muthusamy, Senthilkumar K., Gupta, R.K., Jaiswal, Sarika, Iquebal, Mir Asif, Angadi, U.B., Kumar, Neeraj, Fatma, Samar, Rai, Anil, Kumar, Dinesh (2016) Draft Genome Sequence of the Karnal Bunt fungus, Tilletia indica Mitra: Two monosporidial lines (PSWKBGH-1 and 2). Genome Announcement 4(5):e00928-16. doi:10.1128/genomeA.00928-16.
  22. Kaur, Sukhdeep, Iquebal, M.A., Jaiswal, Sarika, Tandon, Gitanjali, Sundaram, R.M., Gautam, R.K., Suresh, K.P., Rai, Anil and Kumar Dinesh (2016). A meta-analysis of potential candidate genes associated with salinity stress tolerance in rice. Agrigene 1, 126-134.
  23. Shukla, Shantanu Shukla, Iquebal, MA, Jaiswal, Sarika, Angadi, UB, Fatma, Samar, Kumar, Neeraj, Jasrotia, Rahul S, Fatima, Yasmin, Rai, Anil, Kumar, Dinesh (2016) The Onion Genomic Resource: A Genomics and Bioinformatics driven resource for onion breeding. Plant Gene, 8: 9-15
  24. A Journal of Biotechnology (2012) 11:39, 9315-9322 ; NAAS Score 45 (A045) 7/10.
  25. A Journal of Biotechnology(2012) 11:50, 11057-11064, NAAS Score 45 (A045) 7/10.
  26. Annals of Microbiology (2012)62-2-655-666 Springer, NAAS Score 126 (A126) 6.8/10.
  27. International J of Dairy Tech( 2011) 64(3)437-443, NAAS Score 874 (I111) 7.3/10.
  28. Bioresource Technology (2011)102:10, 5968-5975- Elsevier NAAS Score 319 (B088) 8.1/10.
  29. Immunogenetics (2011): 63: 2, 115-9 Springer, Thomson Reuter IF 2.934.
  30. Science (2009), 324 (5926), 522-528(USA), NAAS Score 1669 (S007) 10/10.
  31. PNAS (2009)- 46:19250-19255 (USA); NAAS Score 1589 (P100) 9.1/10.
  32. Bioinformation (2009) 4(4) 158-163 (2009) Thompson Equivalent IF1.6.
  33. Dairy Sci & Tech (2009) 89: 531–540. Springer, NAAS Score 504 (D005) 7.5/10.
  34. Small Ruminant Research (2009), 82 (2-3)156-160, Elsevier Journals, NAAS Score 1688 (S025) 7.5/10.
  35. Food Biotechnology (2009), 23 (1), 83-96,Taylor & Francis, NAAS Score 668 (F035) 7/10.
  36. SAGA (2009), 58(4), 205-208 , Taylor & Francis, NAAS Score 6 (A006) 6.9/10.
  37. Journal of Applied Genetics(2008), 49(4), 379-81 Springer Thomson Reuter IF 1.2.
  38. SAJAS (2008) 38:2, 131-135, NAAS Score 1698 (S034) 6.9/10.
  39. Genetika (2007), 43(9), 1198-208, Springer Journals, Thomson Reuter IF 0.427.
  40. Meat Sciences (2007), 76, 658-665, Elsevier journals, NAAS Score 1347 (M015) 7.8/10.
  41. Antonie van Leeuwenhoek (2015), Journal of Microbiology (Springer), Thompson IF =2.137, NAAS score 8.07.
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